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Picture of Nate Russell

About Me

Senior Machine Learning Scientist working in BioTech/Pharma. Striving to advance the fields of machine learning and drug discovery.

Professional Interests:
Deep Generative Models for molecules/proteins/text, Active Learning, Metric Learning, Deep Reinforcement Learning, Goal Oriented Generative Dialog Systems, Bayesian Optimization, Heterogeneous Network Mining and Embedding, Multi-Objective Optimization, & Quantified Decision Making.

For Fun:
Audio Books, Cycling, and Cooking

Scholar Resume

Publications

Integrating Deep Neural Networks and Symbolic Inference for Organic Reactivity Prediction

Integrating Deep Neural Networks and Symbolic Inference for Organic Reactivity Prediction

Authors: Wesley Wei Qian, Nathan T. Russell ,Claire L. W. Simons ,Yunan Luo ,Martin D. Burke ,Jian Peng
Date: 2020
Journal/Publisher: ChemRxiv

Paper

Synthetic Planning and Library Optimization for Automated Cross Coupling Synthesis Platforms

Synthetic Planning and Library Optimization for Automated Cross Coupling Synthesis Platforms

Authors: Nathan Russell, Andrea Palazzolo Ray, Claire Simons, Martin D. Burke, Jian Peng
Date: 2020
Conference: MIT AIDM

Paper

Automated Brain State Identification Using Graph Embedding

Automated Brain State Identification Using Graph Embedding

Authors: Hongyuan You, Adam Liska, Nathan Russell, Payel Das
Date: 2017
Journal/Publisher: 2017 International Workshop on Pattern Recognition in Neuroimaging

Paper

SCALABLE VISUALIZATION FOR HIGH-DIMENSIONAL SINGLE-CELL DATA

Scalable Visualization for High-Dimensional Single-Cell Data

Authors: Juho Kim, Nate Russell, Jian Peng
Date: 2017
Journal/Publisher: PACIFIC SYMPOSIUM ON BIOCOMPUTING 2017

Paper

Stool-based biomarkers of interstitial cystitis/bladder pain syndrome

Stool-based biomarkers of interstitial cystitis/bladder pain syndrome

Authors: A Braundmeier-Fleming, Nate Russell, Wenbin Yang, Megan Y Nas, Ryan E Yaggie, Matthew Berry, Laurie Bachrach, Sarah C Flury, Darlene S Marko, Colleen B Bushell, Michael E Welge, Bryan A White, Anthony J Schaeffer, David J Klumpp
Date: 2016
Journal/Publisher: Nature Scientific reports 2016

Paper

ClusterEnG: An interactive educational web resource for clustering big data

ClusterEnG: An interactive educational web resource for clustering big data

Authors: Mohith Manjunath, Yi Zhang, Steve H Yeo, Omar Sobh, Nate Russell, Christian Followell, Colleen Bushell, Umberto Ravaioli, Jun S Song
Date: 2017
Journal/Publisher: bioRxiv

Paper

The use of random forests modelling to detect yeast-mannan sensitive bacterial changes in the broiler cecum

The use of random forests modelling to detect yeast-mannan sensitive bacterial changes in the broiler cecum

Authors: A Corrigan, N Russell, M Welge, L Auvil, C Bushell, BA White, RA Murphy
Date: 2018
Journal/Publisher: Scientific Reports

Paper

Side Projects

devkit

Development Kit

When I want to make myself a utility or explore something new, it starts in the dev-kit

Check it out

PDF2GO

PDF2GO

I want to ride my bike and cook meals nicer than ramen, but I got a mountain of papers to read. PDF2GO grabs the papers I download or bookmark, uses science parse and wavenet to make MP3 albums so i can listen to my papers.

Start Listening